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| Open AccessChronic expression of p16INK4a in the epidermis induces Wnt-mediated hyperplasia and promotes tumor initiation
It is unclear how resident p16-expressing senescent cells affect the propensity of tissues to develop cancer. Here, the authors show that chronic p16 expression in the mouse epidermis causes hyperplasia and dysplasia through Wnt-mediated paracrine stimulation of proliferating keratinocytes, and can contribute to tumour formation.
- Narmen Azazmeh
- , Benjamin Assouline
- & Ittai Ben-Porath
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Article
| Open AccessWhole genome landscapes of uveal melanoma show an ultraviolet radiation signature in iris tumours
Uveal melanoma has a propensity to metastasise. Here, the authors report the whole genome sequence of 103 uveal melanomas and find that the tumour mutational burden is variable and that two subsets of tumours are characterised by MBD4 mutations and a UV exposure signature.
- Peter A. Johansson
- , Kelly Brooks
- & Nicholas K. Hayward
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Article
| Open AccessTranscriptional downregulation of MHC class I and melanoma de- differentiation in resistance to PD-1 inhibition
A significant proportion of patients develop innate or acquired resistance to immune checkpoint inhibitors. Here, the authors show that resistance to anti-PD-1 blockade is associated with TGF-beta driven major histocompatibility complex I (MHCI) down-regulation and a de-differentiated phenotype in melanoma patients.
- Jenny H. Lee
- , Elena Shklovskaya
- & Helen Rizos
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Article
| Open AccessSpatially resolved analyses link genomic and immune diversity and reveal unfavorable neutrophil activation in melanoma
Immunotherapies now dominate the treatment landscape for melanoma, but why they only work in a subset of patients remains unclear. Here, the authors perform an immunogenomic analysis on 67 intratumor sub-regions of a PD-1 inhibitor resistant melanoma, and 2 additional metastases from a single patient, mapping the spatial relationships between genomic and immune heterogeneity at high resolution.
- Akash Mitra
- , Miles C. Andrews
- & P. Andrew Futreal
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Article
| Open AccessLoss of testosterone impairs anti-tumor neutrophil function
It is known that there are sex differences in the incidence and prognosis of certain cancers, including melanoma. In this study, the authors utilize a melanoma model to reveal that castrated mice have a higher metastatic burden associated with androgen dependent impaired neutrophil function.
- Janet L. Markman
- , Rebecca A. Porritt
- & Moshe Arditi
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Article
| Open AccessImmunoproteasome expression is associated with better prognosis and response to checkpoint therapies in melanoma
The response to immunotherapy of melanoma patients is heterogeneous. Here, the authors demonstrate that a high expression of the two major components of the immunoproteasome, PSMB8 and PSMB9, modulates the production of HLA peptides and it is predictive of better survival and improved response to immune-checkpoint inhibitors of melanoma patients.
- Shelly Kalaora
- , Joo Sang Lee
- & Yardena Samuels
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Article
| Open AccessNedd4 ubiquitylates VDAC2/3 to suppress erastin-induced ferroptosis in melanoma
Erastin, the ferroptosis activator, binds to voltage gated ion channels CDAC2 and VDCA3 but treatment with erastin can result in the degradation of the channels. Here, the authors show that Nedd4 is induced following erastin treatment, which leads to the ubiquitination and subsequent degradation of the channels.
- Yongfei Yang
- , Meiying Luo
- & Wei Chen
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Article
| Open AccessResistance of melanoma to immune checkpoint inhibitors is overcome by targeting the sphingosine kinase-1
There are many patients who do not respond to immune checkpoint inhibitor (ICI) immunotherapy. Here, the authors show a significant negative correlation between sphingosine kinase-1 (SK1) expression and survival for ICI-treated melanoma patients, and further show that targeting SK1 improves response to ICI in mouse cancer models.
- Caroline Imbert
- , Anne Montfort
- & Céline Colacios
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Article
| Open AccessMelanoblast transcriptome analysis reveals pathways promoting melanoma metastasis
Metastatic cells can mimic many of the phenotypic behaviors of embryonic cells. Here, the authors generate a melanoblast-specific transcriptome using a genetically engineered mouse model and identify KDELR3 as a pro-metastasis gene in melanoma.
- Kerrie L. Marie
- , Antonella Sassano
- & Pravin J. Mishra
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Article
| Open AccessSiah2 control of T-regulatory cells limits anti-tumor immunity
The ubiquitin ligase Siah2 has been implicated in immune responses. Here, the authors show that Siah2 null immune cells have an increased inflammatory response to inoculated melanoma cells, along with a reduced number of infiltrating immunosuppressive regulatory T cells, resulting in inhibition of tumour growth.
- Marzia Scortegagna
- , Kathryn Hockemeyer
- & Ze’ev A. Ronai
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Article
| Open AccessAn epitranscriptomic mechanism underlies selective mRNA translation remodelling in melanoma persister cells
Melanoma persister cells are tolerant to anti-BRAF and anti-MEK inhibition and can trigger cancer relapse. Here the authors show that a subset of N6-methyladenosine modified mRNAs is translationally activated in persister cells. This preferential translation can be abrogated via eIF4A inhibition.
- Shensi Shen
- , Sara Faouzi
- & Caroline Robert
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Article
| Open AccessAn open source automated tumor infiltrating lymphocyte algorithm for prognosis in melanoma
Histology data exists for many cancer samples and the ability to automatically image this data may provide prognostic information. Here, the authors generated an algorithm to measure tumour infiltrating lymphocytes in melanoma histology specimens and show that the ratio of these immune cells to tumour cells has prognostic value.
- Balazs Acs
- , Fahad Shabbir Ahmed
- & David L. Rimm
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Article
| Open AccessModulating multi-functional ERK complexes by covalent targeting of a recruitment site in vivo
The ERK signalling pathway is activated in many cancers, however ERK1 and ERK2 are difficult to target pharmacologically. Here, the authors identify a small molecule inhibitor that binds covalently to the D-recruitment site of ERK and induces cell death and reduces tumour growth in mice.
- Tamer S. Kaoud
- , William H. Johnson
- & Kevin N. Dalby
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Article
| Open AccessDestabilization of NOXA mRNA as a common resistance mechanism to targeted therapies
MAPK-targeted therapies fail to achieve complete remission. Here, the authors show that anti-apoptosis resistance is acquired in these targeted therapies through the mRNA destabilization of NOXA which leads to dependence on MCL-1, and that sequential combination of MCL-1 inhibition with targeted therapies overcomes this resistance.
- Joan Montero
- , Cécile Gstalder
- & Rizwan Haq
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Article
| Open AccessA novel mouse model demonstrates that oncogenic melanocyte stem cells engender melanoma resembling human disease
Currently, few mouse models exist to recapitulate human melanomagenesis. Here, the authors establish a c-Kit-CreER-driven model to target melanocyte stem cells (McSCs) and show that oncogenic McSCs give rise to epidermal melanoma that invade into the dermis, similar to human melanoma.
- Qi Sun
- , Wendy Lee
- & Mayumi Ito
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Article
| Open AccessEpigenetic modifiers DNMT3A and BCOR are recurrently mutated in CYLD cutaneous syndrome
CYLD cutaneous syndrome (also known as Brooke-Spiegler syndrome) is characterised by germline mutations in the tumor suppressor CYLD. Here, the authors highlight recurrent mutations in DNMT3A and BCOR, indicating a role for epigenetic dysregulation in this rare genetic skin disease.
- Helen R. Davies
- , Kirsty Hodgson
- & Neil Rajan
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Article
| Open AccessTissue-resident memory CD8+ T cells amplify anti-tumor immunity by triggering antigen spreading through dendritic cells
Immunotherapy can induce antigen spreading of antitumor T cell response, which correlates with better outcomes. Here the authors show that tissue-resident memory CD8 T cells promote antigen spreading via lysing tumor cells and promoting their uptake and cross-presentation by dendritic cells, thereby eliciting de novo T cell responses.
- Evelyn Menares
- , Felipe Gálvez-Cancino
- & Alvaro Lladser
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Article
| Open AccessB cells sustain inflammation and predict response to immune checkpoint blockade in human melanoma
The regulation of tumor inflammation is incompletely understood and the role of B cells is unclear. Here, the authors show that a specific subtype of B cells is induced in melanoma and required to recruit T lymphocytes and elicit inflammation.
- Johannes Griss
- , Wolfgang Bauer
- & Stephan N. Wagner
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Article
| Open AccessCSL controls telomere maintenance and genome stability in human dermal fibroblasts
Conversion of dermal fibroblasts into Cancer Associated Fibroblasts (CAFs) can play an important role in keratinocyte tumour development. Here the authors reveal that CSL plays a role in maintenance of telomeres and genomic integrity in both dermal fibroblasts and CAFs.
- Giulia Bottoni
- , Atul Katarkar
- & G. Paolo Dotto
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Article
| Open AccessWhole-genome landscape of mucosal melanoma reveals diverse drivers and therapeutic targets
Mucosal melanomas are challenging to treat partly because so little is known about the genetic drivers underpinning them. Here, the authors perform a genomic landscape analysis of samples collected from three continents, revealing a potential role for CDK4/6 or MEK inhibition in the treatment of the disease.
- Felicity Newell
- , Yan Kong
- & Richard A. Scolyer
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Article
| Open Accessm6A mRNA demethylase FTO regulates melanoma tumorigenicity and response to anti-PD-1 blockade
FTO is an m6A demethylase. Here, the authors show that FTO promotes melanoma tumorigenicity and contributes to resistance to anti-PD1 blockade, while FTO inhibition sensitizes melanoma to anti-PD1 blockade.
- Seungwon Yang
- , Jiangbo Wei
- & Yu-Ying He
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Article
| Open AccessLNK suppresses interferon signaling in melanoma
LNK is a tumor suppressor in hematopoietic cancers, but its function in melanoma is unclear. Here, the authors show that the overexpression of LNK in melanomas correlate with hyperactive signaling of the RAS-RAF-MEK pathway and LNK enhances melanoma growth and survival and immune evasion by inhibiting IFN signalling.
- Ling-Wen Ding
- , Qiao-Yang Sun
- & H. Phillip Koeffler
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Article
| Open AccessTranscriptional regulation of autophagy-lysosomal function in BRAF-driven melanoma progression and chemoresistance
The relationship between autophagy and BRAF signalling is unclear. Here, the authors describe that BRAF inhibition induces the autophagy-lysosomal function in BRAF-mutant melanomas via modulation of the TFEB and ZKSCAN3 transcriptome, which downregulates TGF-β and suppresses melanoma progression.
- Shun Li
- , Ying Song
- & Chengyu Liang
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Article
| Open AccessGut microbiota dependent anti-tumor immunity restricts melanoma growth in Rnf5−/− mice
RNF5 is a ubiquitin ligase regulating ER stress response. Here the authors show that Rnf5 deficiency potentiates immune response against melanoma via altered microbiota, and isolate bacterial strains that confer the same phenotype to wild type mice.
- Yan Li
- , Roberto Tinoco
- & Ze’ev A. Ronai
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Article
| Open AccessTargeting MC1R depalmitoylation to prevent melanomagenesis in redheads
Melanocortin-1 receptor is a palmitoylated protein and variants of the receptor are associated with red hair colour and susceptibility to melanoma. Here, the authors describe a method to enhance the palmitoylation of the receptor, which can inhibit melanomagenesis in mice.
- Shuyang Chen
- , Changpeng Han
- & Rutao Cui
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Article
| Open AccessCross-species genomic landscape comparison of human mucosal melanoma with canine oral and equine melanoma
Mucosal melanoma is a rare melanoma subtype that is poorly characterised. Here, the authors sequenced human, canine, and equine melanoma samples and performed a cross-species analysis, which revealed candidate driver genes, recurrent copy number alterations in regions syntenic between species, extensive intra-tumour heterogeneity and potential germline predisposing alleles
- Kim Wong
- , Louise van der Weyden
- & David J. Adams
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Article
| Open AccessIncreased lactate dehydrogenase activity is dispensable in squamous carcinoma cells of origin
Most tumours are characterized by increased aerobic glycolytic activity. Here the authors show that elevated aerobic glycolysis is not essential for cancer initiation by testing the effect of lactate dehydrogenase depletion on the ability of hair follicle stem cells (HFSCs) to form squamous cell carcinoma (SCC) in mouse genetic models.
- A. Flores
- , S. Sandoval-Gonzalez
- & W. E. Lowry
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Article
| Open AccessEndovascular progenitors infiltrate melanomas and differentiate towards a variety of vascular beds promoting tumor metastasis
The contribution of endothelial progenitor cells to tumor angiogenesis is controversial. Here, the authors trace the lineage differentiation of endovascular progenitor cells and demonstrate their functional importance in tumor vascularization and progression.
- Prudence Donovan
- , Jatin Patel
- & Kiarash Khosrotehrani
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Article
| Open AccessLoss of Phd2 cooperates with BRAFV600E to drive melanomagenesis
Prolyl hydroxylase domain protein 2 (PHD2) regulates cellular response to hypoxia. Here the authors show that PHD2 is downregulated in melanoma and that PHD2 depletion, in a mouse model, promotes the progression of benign melanocytic lesions into melanoma, via activation of the Akt/mTOR signaling cascade.
- Shujing Liu
- , Gao Zhang
- & Xiaowei Xu
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Article
| Open AccessBone marrow-derived epithelial cells and hair follicle stem cells contribute to development of chronic cutaneous neoplasms
Bone marrow-derived epithelial cells can be recruited to sites of chronic inflammation. Here, the authors using allogenic bone marrow transplantation in a multistage murine cutaneous carcinogenesis model show that bone marrow-derived epithelial cells and hair follicle stem cells are recruited to cutaneous neoplasms during tumor promotion of carcinogen-exposed skin and bone marrow.
- Heuijoon Park
- , Sonali Lad
- & Rebecca J. Morris
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Article
| Open AccessGene expression imputation identifies candidate genes and susceptibility loci associated with cutaneous squamous cell carcinoma
Genetic loci linked to susceptibility for the common skin cancer cutaneous squamous cell carcinoma (cSCC) have been identified by genome wide association studies (GWAS). Here, the authors impute gene expression levels from GWAS data to perform a transcriptome wide association study (TWAS), identifying five novel genetic loci linked to cSCC susceptibility.
- Nilah M. Ioannidis
- , Wei Wang
- & Alice S. Whittemore
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Article
| Open AccessAcquired cancer resistance to combination immunotherapy from transcriptional loss of class I HLA
Acquired resistance is a major problem in cancer immunotherapy. Here the authors report a study of two patients with Merkel cell carcinoma under immunotherapy treatment who develop resistance after deep responses for >1 year and identified a novel mechanism of acquired, gene-specific transcriptional suppression of HLAs.
- K. G. Paulson
- , V. Voillet
- & A. G. Chapuis
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Article
| Open AccessThe genomic landscape of cutaneous SCC reveals drivers and a novel azathioprine associated mutational signature
It is known cutaneous squamous cell carcinoma (cSCC) involves a high tumour mutation burden. Here the authors identify common cSCC mutated genes, copy number changes, altered pathways and report the presence of a novel mutation signature associated with chronic exposure to the immunosuppressive drug azathioprine.
- Gareth J. Inman
- , Jun Wang
- & Irene M. Leigh
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Article
| Open AccessSIRT6 haploinsufficiency induces BRAFV600E melanoma cell resistance to MAPK inhibitors via IGF signalling
The epigenetic mechanisms of melanoma drug resistance are poorly understood. Here, the authors develop a CRISPR-Cas9 screen targeting epigenetic regulators and discover that SIRT6 haploinsufficiency induces BRAFV600E melanoma cell resistance to MAPK inhibitors via IGF signalling.
- Thomas Strub
- , Flavia G. Ghiraldini
- & Emily Bernstein
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Article
| Open AccessLoss of GCNT2/I-branched glycans enhances melanoma growth and survival
Aberrant glycosylation patterns on cancer cells promote several pro-tumorigenic functions, including enhancing tumor cell proliferation. Here the authors provide data that show melanoma cells downregulate GCNT2 with consequent loss of I-branched glycans; this leads to the formation of extended i-linear glycans and enhances melanoma growth via increases, in part, by IGF-1- and extracellular matrix-induced signaling.
- Jenna Geddes Sweeney
- , Jennifer Liang
- & Charles J. Dimitroff
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Correspondence
| Open AccessChallenging PD-L1 expressing cytotoxic T cells as a predictor for response to immunotherapy in melanoma
- Lieve Brochez
- , Annabel Meireson
- & Vibeke Kruse
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Article
| Open AccessPatterns of genomic evolution in advanced melanoma
As melanoma progresses, it evolves. Here, in advanced melanoma the authors study genomic evolution, highlighting trunk mutations dominated by the ultraviolet damage signature, common late truncal whole-genome duplication events, as well as selective copy number gain of mutant BRAF.
- E. Birkeland
- , S. Zhang
- & P. E. Lønning
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Article
| Open AccessSustained SREBP-1-dependent lipogenesis as a key mediator of resistance to BRAF-targeted therapy
Melanoma patients harbouring BRAFV600E mutation generally develop resistance to targeted therapy. In this study, the authors demonstrate that SREBP-1-mediated induction of lipid biosynthesis contributes to therapy resistance in BRAF mutant melanoma.
- Ali Talebi
- , Jonas Dehairs
- & Johannes V. Swinnen
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Article
| Open AccessADAR1-mediated regulation of melanoma invasion
In metastatic melanoma, ADAR1 is downregulated, facilitating proliferation. Here, the authors show an ADAR1-dependent and RNA-editing-independent regulation of melanoma invasion mediated by ITGB3 expression, which can be reversed when ITGB3 is blocked.
- Yael Nemlich
- , Erez Nissim Baruch
- & Gal Markel
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Article
| Open AccessCell of origin and mutation pattern define three clinically distinct classes of sebaceous carcinoma
Sebaceous carcinomas (SeC) are cutaneous malignancies that sometimes metastasize and cause death. Here the authors perform whole-exome sequencing on 32 SeC and report distinct mutational classes that may explain cancer ontogeny and clinical outcome.
- Jeffrey P. North
- , Justin Golovato
- & Raymond J. Cho
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Article
| Open AccessA geometric approach to characterize the functional identity of single cells
Functional characterisation of single cells is crucial for uncovering the true extent of cellular heterogeneity. Here the authors offer an approach to infer functional identities of cells from their transcriptomes, identify their dominant function, and reconstruct the underlying regulatory networks.
- Shahin Mohammadi
- , Vikram Ravindra
- & Ananth Grama
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Article
| Open AccessCharacterising the phenotypic evolution of circulating tumour cells during treatment
Monitoring the heterogeneity of circulating tumour cells (CTCs) and their phenotypic changes during treatment is a challenge. This study describes and tests a method for detection and quantitative heterogeneity analysis of melanoma CTCs in 10 stage-IV melanoma patients.
- Simon Chang-Hao Tsao
- , Jing Wang
- & Matt Trau
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Article
| Open AccessHOXA9 inhibits HIF-1α-mediated glycolysis through interacting with CRIP2 to repress cutaneous squamous cell carcinoma development
Hypoxia-inducible transcription factor HIF-1α promotes glycolysis allowing cell survival under stress. Here the authors show, using both cell lines and animal models, that in cutaneous squamous cell carcinoma HOXA9 acts as a tumor suppressor and inhibits glycolysis by associating with CRIP2 to repress HIF-1α binding to target genes.
- Liang Zhou
- , Yinghui Wang
- & Zhenhua Ding
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Article
| Open AccessGenetic alterations driving metastatic colony formation are acquired outside of the primary tumour in melanoma
For several cancer types, mouse models indicate that metastasis occurs early. Here, the authors show that human melanoma cells disseminate early and illustrate a genetic colonisation signature that evolves in parallel at different sites.
- Melanie Werner-Klein
- , Sebastian Scheitler
- & Christoph A. Klein
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Article
| Open AccessMethylation profiling identifies two subclasses of squamous cell carcinoma related to distinct cells of origin
Cutaneous squamous cell carcinoma (cSCC) is a skin cancer that normally progresses from UV-induced actinic keratosis (AK). Here, the authors investigate the epigenomics of cSCC and highlight two distinct subclasses of AK and cSCC originating from distinct keratinocyte differentiation stages.
- Manuel Rodríguez-Paredes
- , Felix Bormann
- & Frank Lyko
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Article
| Open AccessA-to-I miR-378a-3p editing can prevent melanoma progression via regulation of PARVA expression
In melanoma, reduced ADAR1 impairs A-to-I microRNA editing. Here, the authors show that miR-378a-3p undergoes this editing in non-metastatic cells and the edited form of miR-378a-3p binds to the PARVA oncogene, inhibiting its expression and preventing melanoma progression and metastasis.
- Guermarie Velazquez-Torres
- , Einav Shoshan
- & Menashe Bar-Eli
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Article
| Open AccessThe protective role of DOT1L in UV-induced melanomagenesis
The interaction of DOT1L with MLL oncogenic fusion proteins has been implicated in leukemogenesis. Here, the authors show a contrasting role for DOT1L in protecting UVR-induced melanomagenesis by facilitating DNA repair through interaction with XPC.
- Bo Zhu
- , Shuyang Chen
- & Rutao Cui
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Article
| Open AccessTNFα blockade overcomes resistance to anti-PD-1 in experimental melanoma
Most melanoma patients do not respond to anti-PD1 therapy. Here, the authors show that TNFα blockade synergizes with anti-PD-1 by preventing anti-PD-1-induced CD8+ T cell death and TIM-3 expression on such cells.
- Florie Bertrand
- , Anne Montfort
- & Bruno Ségui
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Article
| Open AccessGlobal unleashing of transcription elongation waves in response to genotoxic stress restricts somatic mutation rate
Precise orchestration of gene expression regulation upon DNA damage is essential for genome integrity. Here the authors identify a novel widespread stress-triggered defence mechanism that promotes rapid transcription-driven genomic surveillance thus limiting mutagenesis and shaping cancer genomes.
- Matthieu D. Lavigne
- , Dimitris Konstantopoulos
- & Maria Fousteri