Metabolism articles within Nature Communications

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  • Article |

    The role of metabolic reprogramming in the regulation of innate inflammatory response remains incompletely understood. Here, the authors show that pyruvate kinase M2-mediated aerobic glycolysis contributes to inflammatory response, and that inhibition of this pathway protects mice from lethal endotoxemia and sepsis.

    • Liangchun Yang
    • , Min Xie
    •  & Daolin Tang

  • Article |

    When exposed to chronic endoplasmic reticulum (ER) stress, cells downregulate protein synthesis by inhibiting mTOR signalling. Park et al.identify Sestrin2 as a transcriptional target of the ER stress pathway and an important mediator of this protective response in the liver.

    • Hwan-Woo Park
    • , Haeli Park
    •  & Jun Hee Lee

  • Article |

    Enzymes required for the production of hydrogen sulphide (H2S) are expressed in mammalian reproductive tracts. Here, the authors show that production of H2S regulates contraction in excised human fallopian tube samples and is required for transport of the embryo through the fallopian tube in mice.

    • Nannan Ning
    • , Jianchun Zhu
    •  & Jingxin Li

  • Article |

    Brown adipocytes are rich in mitochondria and influence whole-body energy balance. Here, Duteil et al. show that the lysine-specific demethylase 1 (LSD1) controls mitochondrial biogenesis and the formation of brown-like adipocytes, and that LSD1 overexpression in white fat reduces weight gain of mice on a high-fat diet.

    • Delphine Duteil
    • , Eric Metzger
    •  & Roland Schüle

  • Article
    | Open Access

    NAD and NADP play fundamentally different roles in cellular metabolism, and yet these pyridine nucleotides cannot be distinguished spectroscopically in living cells. Blacker et al.demonstrate that fluorescence lifetime imaging can be used to quantify NADPH/NADH balance in cultured cells and in the mammalian cochlea.

    • Thomas S. Blacker
    • , Zoe F. Mann
    •  & Michael R. Duchen

  • Article |

    Mice overexpressing the mitochondrial protein MitoNEET in white adipose tissue (WAT) are very fat but metabolically healthy. Here the authors study the physiological consequences of MitoNEET overexpression in WAT, showing that this triggers an initial browning and that the subsequently expanded WAT is less fibrotic.

    • Christine M. Kusminski
    • , Jiyoung Park
    •  & Philipp E. Scherer

  • Article |

    Metabolic regulation is emerging as an important component of immune response control and may be implicated in the development of inflammatory diseases. Here, the authors show that inflammatory leukocyte recruitment depends on mitochondrial metabolism in epidermal cells in zebrafish.

    • Christopher J. Hall
    • , Rachel H. Boyle
    •  & Philip S. Crosier

  • Article
    | Open Access

    The consumption of fermentable carbohydrates, or fibre, is associated with weight loss. Here the authors show that the metabolite acetate, created by fermentation of fibre in the mouse colon, is taken up into the brain where it induces appetite-suppressing neuronal activity in the hypothalamus.

    • Gary Frost
    • , Michelle L. Sleeth
    •  & Jimmy D. Bell

  • Article |

    The transcription factor NR5A1 has so far mainly been known for regulating the biosynthesis of steroids. Here the authors discover that NR5A1 also has a role in energy metabolism, demonstrating that NR5A1 regulates several key enzymes involved in the breakdown of glucose.

    • Takashi Baba
    • , Hiroyuki Otake
    •  & Ken-Ichirou Morohashi

  • Article
    | Open Access

    D-Glucosamine is a dietary supplement widely used for the treatment of osteoarthritis. Here Weimer et al. show that D-glucosamine extends the life span of Caenorhabditis elegans and of mice by mimicking the molecular effects of a diet low in carbohydrates.

    • Sandra Weimer
    • , Josephine Priebs
    •  & Michael Ristow

  • Article
    | Open Access

    In hypoxic conditions, cells depend on anaerobic respiration, which results in extracellular acidosis. Khacho et al.find that acidosis serves a protective function, enhancing mitochondrial respiratory capacity and sustaining ATP synthesis despite limited oxygen availability, by both promoting mitochondrial fusion and inhibiting fission.

    • Mireille Khacho
    • , Michelle Tarabay
    •  & Ruth S. Slack

  • Article |

    Resources are finite for living organisms; therefore, compromises are required when partitioning resources to different tasks. Here, the authors use the Pareto concept to show how a trade-off is achieved in terms of the performance and metabolic efficiency in a panel of 97 Arabidopsis thalianaaccessions.

    • Sabrina Kleessen
    • , Roosa Laitinen
    •  & Zoran Nikoloski

  • Article |

    Glucocorticoid levels in the body are controlled by an intricate feedback system acting on the hypothalamus. Here the authors provide molecular insight into this process, identifying TrkB signalling in cholecystokinin-GABAergic neurons as a key component of hypothalamic glucocorticoid signalling.

    • Mirjam Geibel
    • , Sylvia Badurek
    •  & Liliana Minichiello

  • Article |

    The milk-ejection reflex in mammals requires the coordinated bursting of oxytocin neurons in the hypothalamus. Here, Israel et al.show that the rhythmic bursting behaviour displayed by these neurons is active in both male and female neonatal rats, but is inactivated in males after the first week of life.

    • Jean-Marc Israel
    • , Jean-Marie Cabelguen
    •  & Philippe Ciofi

  • Article
    | Open Access

    The precise regulation of mammalian body temperature is important for survival. Here the authors show that the peptidase nardilysin represses the transcription factor PGC-1α, and identify nardilysin as a regulator of basal body temperature, cold-induced thermogenesis and body insulation.

    • Yoshinori Hiraoka
    • , Tatsuhiko Matsuoka
    •  & Eiichiro Nishi

  • Article
    | Open Access

    The conversion of testosterone into oestrogen in the brain is implicated in male aggressive behaviour. Ubuka et al.show that gonadotropin-inhibitory hormone inhibits male aggression by increasing oestrogen synthesis in the brain beyond its optimum concentration for the expression of aggressive behaviour.

    • Takayoshi Ubuka
    • , Shogo Haraguchi
    •  & Kazuyoshi Tsutsui

  • Article |

    Alterations in hepatocyte metabolism can lead to disorders such as non-alcoholic steatohepatitis (NASH). Here the authors create a comprehensive model of hepatocyte metabolism and use it to identify metabolic pathways altered in disease, revealing that serine levels are reduced in patients with NASH.

    • Adil Mardinoglu
    • , Rasmus Agren
    •  & Jens Nielsen

  • Article |

    Identifying functionally important features of complex biological networks is computationally challenging. Ganter et al.develop a probabilistic framework that uses recurrent metabolite patterns to predict the properties and existence of reactions within a genome-scale metabolic network.

    • Mathias Ganter
    • , Hans-Michael Kaltenbach
    •  & Jörg Stelling

  • Article |

    The mitochondrial calcium uniporter supports oxidative phosphorylation in mammals; however, it is also present in blood-stage trypanosomes, which lack a functional respiratory chain. Huang et al. show that the mitochondrial calcium uniporter is essential for blood-stage survival and metabolism in Trypanosoma brucei.

    • Guozhong Huang
    • , Anibal E. Vercesi
    •  & Roberto Docampo

  • Article |

    Methane is a promising renewable carbon source for chemical synthesis, yet methane bio-gas is currently underutilised as a feedstock. Here the authors examine the metabolic processes of methanotrophic bacteria to assess their use for conversion of methane to value-added chemical products.

    • M. G. Kalyuzhnaya
    • , S. Yang
    •  & M. E. Lidstrom

  • Article
    | Open Access

    Wnt7a regulates various aspects of skeletal muscle function. Here, the authors show that a truncated Wnt7a protein lacking the palmitoylation domain retains its biological activity in skeletal muscle, suggesting that simplified Wnt7a proteins may be viable as Wnt-based therapeutics.

    • Julia von Maltzahn
    • , Radoslav Zinoviev
    •  & Michael A. Rudnicki

  • Article
    | Open Access

    Endothermy facilitated mammalian species radiation, but the events leading to sustained thermogenesis are not clear. Here, the authors report functional brown adipose tissue in a protoendothermic mammal, linking nonshivering thermogenesis directly to the roots of eutherian endothermic evolution.

    • Rebecca Oelkrug
    • , Nadja Goetze
    •  & Carola W. Meyer

  • Article |

    Energy demand in muscle is largely due to maintaining the membrane potential of muscle fibres. Jimenez et al.study the metabolic cost of maintaining the membrane potential of muscle fibres across different species of crustaceans and fishes, and find that larger fibres are metabolically cheaper to maintain.

    • Ana Gabriela Jimenez
    • , Richard M. Dillaman
    •  & Stephen T. Kinsey

  • Article |

    Haplotypes in CNR1, the gene encoding the cannabinoid receptor CB1, are known to influence HDL cholesterol levels. Here Feng and colleagues identify rs806371 as a novel regulatory element reducing CNR1 gene expression and as the causal allele driving the association between CNR1 and HDL cholesterol levels in humans.

    • Q. Feng
    • , K.C. Vickers
    •  & R.A. Wilke

  • Article
    | Open Access

    The gut microbiota produces metabolites such as short-chain fatty acids (SCFAs), which can influence the development of obesity. Here Kimura et al.show that SCFAs act via the receptor GPR43, which acts as a sensor for excessive dietary energy and controls body energy utilization as well as metabolic homoeostasis.

    • Ikuo Kimura
    • , Kentaro Ozawa
    •  & Gozoh Tsujimoto

  • Article |

    Changes in the biosynthesis of fatty acids can influence tissue insulin sensitivity and the development of metabolic diseases. Eissing and colleagues show that de novolipogenesis in liver and adipose tissue is linked to metabolic health in humans and can be modulated by bariatric surgery.

    • Leah Eissing
    • , Thomas Scherer
    •  & Ludger Scheja

  • Article |

    Hydrogen sulphide is a signalling molecule with cytoprotective activity in mammals. Here, Kimura and colleagues identify a new biosynthetic pathway for the production of hydrogen sulphide from D-cysteine, which is shown to protect mouse kidneys from oxidative stress after ischaemia/reperfusion injury.

    • Norihiro Shibuya
    • , Shin Koike
    •  & Hideo Kimura

  • Article |

    Splicing factors, such as the protein SRSF3, regulate mRNA metabolism but are hard to study in vivobecause genetic kockouts are usually lethal. Here, Sen and colleagues create mice with a hepatocyte-specific knockout of Srsf3 and demonstrate its role in hepatocyte differentiation and liver function.

    • Supriya Sen
    • , Hassan Jumaa
    •  & Nicholas J. G. Webster

  • Article |

    The flow of calcium into the mitochondrial matrix is mediated by the mitochondrial calcium uniporter. Fieniet al. apply patch-clamp techniques to mitoplasts isolated from different mouse and Drosophilatissues and find that the mitochondrial calcium uniporter activity varies depending on the tissue studied.

    • Francesca Fieni
    • , Sung Bae Lee
    •  & Yuriy Kirichok

  • Article
    | Open Access

    To describe the biochemical composition of an organism multiple data sets must be combined and this information can then be used forin silico analysis. By combining metabolism and transcription data, Lerman et al. discovered new regulons and improved the gene annotation for the simple organism Thermotoga maritima.

    • Joshua A. Lerman
    • , Daniel R. Hyduke
    •  & Bernhard O. Palsson

  • Article
    | Open Access

    Cachexia, or muscle-wasting syndrome, is often observed in patients with cancer or sepsis, and no specific treatment of cachexia is currently available. In this study, Di Marcoet al.show that low doses of pateamine A, an inhibitor of translation initiation, prevent cachexia in a mouse model of the disease.

    • Sergio Di Marco
    • , Anne Cammas
    •  & Imed Eddine Gallouzi

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