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| Open AccessATP synthase evolution on a cross-braced dated tree of life
The timing of cellular evolution is poorly constrained. Here, the authors used improved molecular dating approaches to study the evolution of the ATP synthase in light of a dated tree of life thereby providing an absolute timescale for cellular evolution including eukaryotic origins.
- Tara A. Mahendrarajah
- , Edmund R. R. Moody
- & Anja Spang
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| Open AccessGenomics of soil depth niche partitioning in the Thaumarchaeota family Gagatemarchaeaceae
Non-ammonia oxidising Thaumarachaeota lineages are common in acidic soils, but their evolution is unclear. Here, the authors assemble 15 genomes from deeply rooted Thaumarachaeota in topsoils and subsoils, investigating evolutionary divergence in the family Gagatemarchaeaceae.
- Paul O. Sheridan
- , Yiyu Meng
- & Cécile Gubry-Rangin
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| Open AccessCellular differentiation into hyphae and spores in halophilic archaea
Bacteria of the genus Streptomyces have complex life cycles involving cellular differentiation and multicellular structures that have never been observed in archaea. Here, the authors show that several halophilic archaea display a life cycle resembling that of Streptomyces bacteria, undergoing cellular differentiation into mycelia and spores.
- Shu-Kun Tang
- , Xiao-Yang Zhi
- & Ping Xu
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| Open AccessArchaeal DNA-import apparatus is homologous to bacterial conjugation machinery
Bacteria can exchange DNA through extracellular appendages (‘mating pili’) in a process known as conjugation. Here, Beltran et al. determine atomic structures by cryo-electron microscopy of a bacterial conjugative pilus and two archaeal pili, showing that the archaeal pili are homologous to bacterial mating pili.
- Leticia C. Beltran
- , Virginija Cvirkaite-Krupovic
- & Mart Krupovic
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| Open AccessProteome-wide 3D structure prediction provides insights into the ancestral metabolism of ancient archaea and bacteria
Previous studies have reconstructed ancestral metabolism using sequence-based approaches. This study uses a high-throughput version of AlphaFold2 to compare proteome-wide 3D structure predictions of two representative strains of ancient archaea and bacteria.
- Weishu Zhao
- , Bozitao Zhong
- & Xiang Xiao
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| Open AccessDiscovery of archaeal fusexins homologous to eukaryotic HAP2/GCS1 gamete fusion proteins
Sexual reproduction in eukaryotes involves gamete fusion, mediated by fusogenic proteins. Here, the authors identify fusogenic protein homologs encoded within mobile genetic elements in archaeal genomes, solve the crystal structure of one of the proteins, and show that its ectopic expression can fuse mammalian cells, suggesting potential roles in cell-cell fusion and gene exchange.
- David Moi
- , Shunsuke Nishio
- & Benjamin Podbilewicz
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| Open AccessAn essential role for tungsten in the ecology and evolution of a previously uncultivated lineage of anaerobic, thermophilic Archaea
Trace metals have been an important ingredient for life throughout Earth’s history. Here, the authors show that a member of an elusive archaeal lineage (Caldarchaeales or Aigarchaeota) requires tungsten for growth, and provide evidence that tungsten-dependent metabolism played a role in the origin and evolution of this lineage.
- Steffen Buessecker
- , Marike Palmer
- & Jeremy A. Dodsworth
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| Open AccessAsgard archaea shed light on the evolutionary origins of the eukaryotic ubiquitin-ESCRT machinery
The ESCRT pathway is crucial for membrane remodelling in eukaryotes. Here, Hatano et al. explore the phylogeny, structure, and biochemistry of homologues of the ESCRT machinery and the associated ubiquitylation system in Asgard archaea, the closest living relatives of eukaryotes.
- Tomoyuki Hatano
- , Saravanan Palani
- & Mohan Balasubramanian
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| Open AccessHikarchaeia demonstrate an intermediate stage in the methanogen-to-halophile transition
A study of the first genomes of the marine Hikarchaeia, the closest known relatives of Haloarchaea, is presented. Their inclusion in ancestral reconstructions unveils an intermediate stage in the evolutionary transition from ancestral anaerobic methanogens to modern day aerobic halophiles.
- Joran Martijn
- , Max E. Schön
- & Thijs J. G. Ettema
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| Open AccessUndinarchaeota illuminate DPANN phylogeny and the impact of gene transfer on archaeal evolution
The evolutionary relationships within Archaea remain unresolved. Here, the authors used genomic approaches to study the Undinarchaeota, a previously uncharacterized clade of DPANN, shed light on their position in an updated archaeal phylogeny and illuminate the history of archaeal genome evolution.
- Nina Dombrowski
- , Tom A. Williams
- & Anja Spang
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Article
| Open AccessPhylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea
The authors build a reference phylogeny of 10,575 evenly-sampled bacterial and archaeal genomes, based on 381 markers. The results indicate a remarkably closer evolutionary proximity between Archaea and Bacteria than previous estimates that used fewer “core” genes, such as the ribosomal proteins.
- Qiyun Zhu
- , Uyen Mai
- & Rob Knight
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| Open AccessMixing of meteoric and geothermal fluids supports hyperdiverse chemosynthetic hydrothermal communities
Chemosynthetic microbial communities in hydrothermal environments receiving meteoric and geothermal fluids are understudied. Here, Colman et al. use metagenomics to study one such community from a hot spring at Yellowstone National Park, revealing exceptional biodiversity and unique functional potential.
- Daniel R. Colman
- , Melody R. Lindsay
- & Eric S. Boyd
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| Open AccessThe essential genome of the crenarchaeal model Sulfolobus islandicus
Sulfolobus islandicus is a model organism within the TACK superphylum of the Archaea. Here, the authors perform a genome-wide analysis of essential genes in this organism, show that the proteinaceous S-layer is not essential, and explore potential stages of evolution of the essential gene repertoire in Archaea.
- Changyi Zhang
- , Alex P. R. Phillips
- & Rachel J. Whitaker
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| Open Access‘ARMAN’ archaea depend on association with euryarchaeal host in culture and in situ
In the absence of complete genomes, the metabolic capabilities of uncultured ARMAN-like archaea have been uncertain. Here, Golyshina et al. apply an enrichment culture technique and find that the ungapped genome of the ARMAN-like archaeon Mia14 has lost key metabolic pathways, suggesting dependence on the host archaeon Cuniculiplasma divulgatum.
- Olga V. Golyshina
- , Stepan V. Toshchakov
- & Peter N. Golyshin